Index

A

absolute_time_calculation() (seabirdfilehandler.cnvfile.CnvFile method) add_cast_number() (seabirdfilehandler.cnvfile.CnvFile method) add_default_metadata() (seabirdfilehandler.parameter.Parameters method) add_parameter() (seabirdfilehandler.parameter.Parameters method) add_position_columns() (seabirdfilehandler.bottlefile.BottleFile method) (seabirdfilehandler.cnvfile.CnvFile method)

add_processing_metadata() (seabirdfilehandler.cnvfile.CnvFile method) add_start_time() (seabirdfilehandler.cnvfile.CnvFile method) add_station_and_event_column() (seabirdfilehandler.bottlefile.BottleFile method) (seabirdfilehandler.cnvfile.CnvFile method) adding_timestamp_column() (seabirdfilehandler.bottlefile.BottleFile method) array2cnv() (seabirdfilehandler.cnvfile.CnvFile method)

B

BottleFile (class in seabirdfilehandler.bottlefile)

BottleLogFile (class in seabirdfilehandler.bottlelogfile)

C

CnvCollection (class in seabirdfilehandler.file_collection) CnvFile (class in seabirdfilehandler.cnvfile) CnvProcessingSteps (class in seabirdfilehandler.processing_steps) collect_files() (seabirdfilehandler.file_collection.FileCollection method) convert_date() (seabirdfilehandler.bottlelogfile.BottleLogFile method) create_dataframe() (seabirdfilehandler.bottlefile.BottleFile method) (seabirdfilehandler.bottlelogfile.BottleLogFile method) (seabirdfilehandler.cnvfile.CnvFile method) (seabirdfilehandler.geomar_ctd_file_parser.GEOMARCTDFile method)

create_full_ndarray() (seabirdfilehandler.parameter.Parameters method) create_list() (seabirdfilehandler.bottlelogfile.BottleLogFile method) create_parameter() (seabirdfilehandler.parameter.Parameters method) create_parameter_instances() (seabirdfilehandler.parameter.Parameters method) create_step_instance() (seabirdfilehandler.processing_steps.CnvProcessingSteps method)

D

data_whitespace_removal() (seabirdfilehandler.bottlelogfile.BottleLogFile method) DataFile (class in seabirdfilehandler.datafiles)

define_output_path() (seabirdfilehandler.datafiles.DataFile method) df2cnv() (seabirdfilehandler.cnvfile.CnvFile method) differentiate_table_description() (seabirdfilehandler.parameter.Parameters method)

E

extract_file_type() (seabirdfilehandler.file_collection.FileCollection method)

extract_individual_modules() (seabirdfilehandler.processing_steps.CnvProcessingSteps method)

F

FileCollection (class in seabirdfilehandler.file_collection)

G

GEOMARCTDFile (class in seabirdfilehandler.geomar_ctd_file_parser) get_array() (seabirdfilehandler.file_collection.CnvCollection method) get_collection() (in module seabirdfilehandler.file_collection) get_collection_dataframe() (seabirdfilehandler.file_collection.FileCollection method) get_corresponding_xmlcon() (seabirdfilehandler.hexfile.HexFile method) get_data_table_meta_info() (seabirdfilehandler.file_collection.CnvCollection method) get_dataframes() (seabirdfilehandler.file_collection.CnvCollection method) (seabirdfilehandler.file_collection.FileCollection method) get_names() (seabirdfilehandler.processing_steps.CnvProcessingSteps method) get_pandas_dataframe() (seabirdfilehandler.parameter.Parameters method)

get_pandas_series() (seabirdfilehandler.parameter.Parameter method) get_parameter_list() (seabirdfilehandler.parameter.Parameters method) get_parameter_names() (seabirdfilehandler.parameter.Parameters method) get_processing_step_infos() (seabirdfilehandler.cnvfile.CnvFile method) get_processing_steps() (seabirdfilehandler.file_collection.CnvCollection method) get_sensor_info() (seabirdfilehandler.xmlfiles.XMLCONFile method) get_spans() (seabirdfilehandler.parameter.Parameters method) get_step() (seabirdfilehandler.processing_steps.CnvProcessingSteps method) get_unique_sensor_data() (in module seabirdfilehandler.utils) get_xmlcons() (seabirdfilehandler.file_collection.HexCollection method)

H

HexCollection (class in seabirdfilehandler.file_collection)

HexFile (class in seabirdfilehandler.hexfile)

L

load_files() (seabirdfilehandler.file_collection.FileCollection method)

M

module seabirdfilehandler seabirdfilehandler.bottlefile seabirdfilehandler.bottlelogfile seabirdfilehandler.cnvfile seabirdfilehandler.datafiles seabirdfilehandler.file_collection seabirdfilehandler.geomar_ctd_file_parser seabirdfilehandler.hexfile seabirdfilehandler.parameter seabirdfilehandler.processing_steps seabirdfilehandler.utils seabirdfilehandler.xmlfiles

O

obtaining_reset_time() (seabirdfilehandler.bottlelogfile.BottleLogFile method)

P

Parameter (class in seabirdfilehandler.parameter) Parameters (class in seabirdfilehandler.parameter)

ProcessingStep (class in seabirdfilehandler.processing_steps) PsaFile (class in seabirdfilehandler.xmlfiles)

R

read_file() (seabirdfilehandler.datafiles.DataFile method) (seabirdfilehandler.geomar_ctd_file_parser.GEOMARCTDFile method)

reading_data_header() (seabirdfilehandler.bottlefile.BottleFile method) (seabirdfilehandler.parameter.Parameters method) reading_start_time() (seabirdfilehandler.cnvfile.CnvFile method)

S

seabirdfilehandler module seabirdfilehandler.bottlefile module seabirdfilehandler.bottlelogfile module seabirdfilehandler.cnvfile module seabirdfilehandler.datafiles module seabirdfilehandler.file_collection module seabirdfilehandler.geomar_ctd_file_parser module seabirdfilehandler.hexfile module

seabirdfilehandler.parameter module seabirdfilehandler.processing_steps module seabirdfilehandler.utils module seabirdfilehandler.xmlfiles module select_real_scan_data() (seabirdfilehandler.file_collection.FileCollection method) selecting_columns() (seabirdfilehandler.datafiles.DataFile method) selecting_rows() (seabirdfilehandler.bottlefile.BottleFile method) sensor_xml_to_flattened_dict() (seabirdfilehandler.datafiles.DataFile method) set_dtype_to_float() (seabirdfilehandler.file_collection.FileCollection method) setting_dataframe_dtypes() (seabirdfilehandler.bottlefile.BottleFile method) structure_metadata() (seabirdfilehandler.datafiles.DataFile method)

T

tidy_collection_dataframe() (seabirdfilehandler.file_collection.FileCollection method) to_cnv() (seabirdfilehandler.cnvfile.CnvFile method) to_csv() (seabirdfilehandler.datafiles.DataFile method) (seabirdfilehandler.file_collection.FileCollection method)

to_json() (seabirdfilehandler.xmlfiles.XMLFile method) to_xml() (seabirdfilehandler.xmlfiles.XMLFile method)

U

UnexpectedFileFormat update_span() (seabirdfilehandler.parameter.Parameter method)

update_spans() (seabirdfilehandler.parameter.Parameters method) use_bad_flag_for_nan() (seabirdfilehandler.file_collection.FileCollection method) use_name() (seabirdfilehandler.parameter.Parameter method)

W

with_name_type() (seabirdfilehandler.parameter.Parameters method)

X

XMLCONFile (class in seabirdfilehandler.xmlfiles)

XMLFile (class in seabirdfilehandler.xmlfiles)